Why Carbocene

Biological value should be determined by what works in the world.

Carbocene is an independent plant-biotechnology organization developing productive biological systems and the scientific, field, and institutional capacity required to test their consequences in the world.

Regulation, financing, markets, and organizational design shape the route by which useful biology reaches the world. Biological value remains grounded in what works.

The structural problem

A powerful trait can be difficult to finance, regulate, or carry forward.

Plant biotechnology has to pass through scientific, regulatory, financial, commercial, and organizational systems before it can affect the physical world. Those systems are necessary, but each sees only part of the problem.

A trait can be biologically powerful while being difficult to finance or regulate. Another can fit existing institutional pathways while producing weaker physical outcomes. When those categories are confused, the requirements of the institution begin to determine what is treated as biologically valuable.

Carbocene treats regulation, propagation, field performance, financing, standards, market structure, and long timelines as constraints to specify and work through—not as substitutes for evidence about what the biology actually does.

Plants and growing systems inside Carbocene’s Oakland research greenhouse
Plants and growing systems inside Carbocene’s Oakland research greenhouse.

Carbocene’s response

Measure what the plants actually do.

Plant biotechnology continues from a controlled experiment into propagation systems, field environments, management regimes, ecological communities, material uses, and regulatory systems.

Field performance, biomass, carbon assimilation, materials, ecological interaction, propagation, management, and long-term behavior extend the evidence produced in controlled environments.

Biological questions often take years to answer. Carbocene maintains propagation systems, nursery practice, biological inventory, field methods, measurement, records, facilities, and working relationships across those years.

An institutional lesson

The institution must remain answerable to the biology.

Biotechnology institutions necessarily work through representations: regulatory categories, financing models, product definitions, milestones, market forecasts, and measurements. These tools make coordinated action possible. They become dangerous when success within the representation begins to stand in for success in the underlying physical system.

Carbocene is designed around the opposite ordering. Biological efficacy and physical outcomes remain primary. Financing, regulation, commercialization, philanthropy, licensing, and partnerships are different mechanisms for carrying useful biology forward.

Carbocene builds on years of plant-biotechnology research initiated at Living Carbon, including engineered aspen and conifer programs. When Living Carbon discontinued development and commercialization of its synthetic-biology tree program, Carbocene was established in its present nonprofit form as an independent pathway for continued research and new development.

By that transition, the work already extended from industrial propagation and repeated lead-event validation to replicated field experiments, advanced loblolly pine (Pinus taeda) event selection, and functioning eastern cottonwood (Populus deltoides) transformation. The institutional pathway changed; the biological questions remained.

Carbocene’s intellectual origins precede Living Carbon. Patrick began developing the framework at the 2019 Foresight Planeteers workshop around biological productivity, carbon flux, decomposition, durable materials, and the integration of engineered plants into larger physical systems. He subsequently developed the work with Linda Maepa and Rob Ferber. Living Carbon became one important setting in which parts of this program were developed. Carbocene now pursues the broader program independently.

Regulatory categories, financing models, product definitions, and organizational milestones matter because they shape how useful biology reaches the world. They should not substitute for the question of whether the biology itself works.

Commercial products, licensing, industrial partnerships, grants, philanthropy, and productive land use can each support continued development.

The preservation and deployment gap

Living work can outlast the program that began it.

A genotype can disappear before enough evidence exists to recognize its value.

Plant biotechnology moves through transformation, propagation, regulation, field evaluation, measurement, and productive use over years. When an institution changes direction, living lines, methods, data, tacit knowledge, field experience, provenance, and legal rights can separate.

Carbocene maintains Deer under a nonprofit research license, operates the greenhouse and nursery needed to propagate and study it, reconstructs surviving field records, and develops new biology independently.

Major programs have developed serious experimental biology at universities, research institutes, restoration organizations, and public agencies. Their routes to durable use remain long, institutionally complex, and sometimes reversible.

RIPE — Realizing Increased Photosynthetic Efficiency

Led from the University of Illinois Urbana-Champaign since 2012, RIPE is a major international effort engineering photosynthesis in food crops. Its work spans photorespiration, recovery from photoprotection under fluctuating light, Calvin-cycle and photosynthetic-capacity interventions, transformation, phenotyping, and replicated field experiments in crops including soybean, cowpea, cassava, rice, and maize. RIPE’s published history lists $117 million in successive investments from the Gates Foundation, the Foundation for Food & Agriculture Research, the U.K. government, and Gates Agricultural Innovations. Moving successful traits into locally relevant crop varieties still requires regulatory review across jurisdictions, seed multiplication, distribution, farmer adoption, and institutions able to carry each trait through that transition.

Salk’s Harnessing Plants Initiative

Based at the Salk Institute in La Jolla, California, the Harnessing Plants Initiative engineers crop root systems to increase root mass and depth and to increase suberin, a carbon-rich tissue intended to place more carbon into relatively persistent belowground pools. The program has attracted major philanthropic investment, including a $50 million gift from Hess Corporation. In 2022, Salk helped launch Cquesta to move root-trait discoveries into commercial germplasm, broader field testing, trait licensing, seed-company distribution, and farmer use. Creating that separate deployment organization shows that advanced engineered plants inside a research institute did not automatically acquire a route to routine cultivation.

Blight-resistant American chestnut

SUNY College of Environmental Science and Forestry has pursued a decades-long restoration-biotechnology program for American chestnut, using an oxalate oxidase, or OxO, approach to confer tolerance to chestnut blight. Its leading release pathway was badly disrupted when the program discovered that trees represented in the federal petition as the Darling 58 transformation event were actually Darling 54. This was a lineage-identity and control failure with large institutional consequences, not evidence that engineered plants are intrinsically unknowable. SUNY ESF revised the petition, and USDA APHIS reopened public comment on the corrected Darling 54 review in 2025.

Golden Rice

Golden Rice was developed by Ingo Potrykus and Peter Beyer to produce beta-carotene, a source of provitamin A, in rice endosperm and was later advanced by the International Rice Research Institute and the Philippine Rice Research Institute to address vitamin A deficiency. The Philippines approved commercial propagation in 2021, registered the first variety in 2022, and began pilot-scale planting and seed multiplication. In 2024, the Court of Appeals revoked the propagation permit. PhilRice reports that propagation remains on hold while its appeal is pending before the Supreme Court. The history shows that even biotechnology which progresses through approval into field deployment can lose the legal and institutional conditions required for that deployment to continue.

These programs occupy different points in the long interval between successful biology and durable use. RIPE and Salk have produced substantial experimental biology while routine cultivation requires further translation. American chestnut shows how lineage control and institutional trust can destabilize a program near release. Golden Rice shows that approval and initial deployment do not guarantee continuity.

A field-ready biological platform

Deer can be propagated, planted, and measured across years.

USDA APHIS determined in 2020 that Deer was outside the plant-pest regulatory framework under 7 CFR part 340. Carbocene maintains and propagates the line under a nonprofit research license.

New Deer plantings can accumulate evidence across growth, survival, phenology, management, coppice response, ecological interaction, carbon accumulation, and site variation.

Distributed custody

A biological program should have more than one way to survive.

Biological continuity cannot depend on one company, one financing pathway, one site, or one person holding the entire structure in mind. Carbocene treats living collections, provenance records, documentation, distributed stewardship, shared measurement, renewed collaboration, and public history as parts of scientific infrastructure.

The task is not to make the vision smaller. It is to make its custody redundant. That does not mean reproducing the entire program everywhere. It means creating overlapping forms of custody so that organisms, knowledge, relationships, and evidence remain recoverable through more than one path.

Carbocene is building that redundancy through its Oakland greenhouse and field site, scientific collaborators, institutional partners, public documentation, and carefully governed plant placements. Each living tree can become a node of stewardship: an organism joined to a place, a record, and a person willing to keep it alive.

From argument to experiment

Ideas became organisms, experiments, and field systems.

Patrick’s earlier writing developed the Earth-history argument behind the work: biological innovation has repeatedly altered atmospheric carbon, ecological conditions, and the possibilities available to later life.

Carbocene’s current reconstruction and harmonized source dataset extend that historical line of inquiry as a present scientific artifact, framing causal and systemic questions for the biological program.

The 2019 Foresight film makes this lineage visible. Enhanced biological productivity, carbon retention, durable materials, and planetary responsibility are already spoken as one system before their later division into separate projects. Carbocene publishes the film as provenance rather than retrospective authority—and as a way to honor the people who helped the program take form.

Watch the 2019 Deep Time film

Collaborative teams subsequently turned part of the broader argument into engineered trees, experimental programs, propagation systems, and operational field deployments. Patrick’s authored essays, peer-reviewed research with multiple co-authors, and independent scientific reporting document that movement from argument into biological engineering and field evidence. The operational record spans propagation, nursery scaling, field trials, planting, measurement, field evaluation, and consequential use.

Current Carbocene work

Deep Time reconstruction

A multiscale reconstruction of climate, atmospheric composition, ocean chemistry, and biological change across Earth history.

Explore the current reconstruction

Forests 14(4), 827

Enhanced Photosynthetic Efficiency for Increased Carbon Assimilation and Woody Biomass Production in Engineered Hybrid Poplar

Controlled-environment proof-of-concept research in engineered hybrid poplar.

Read the peer-reviewed paper

Science

To fight climate change, a biotech firm has genetically engineered a very peppy poplar

Independent reporting on the experimental results and scientific limitations.

Read the Science report

The New York Times

For the First Time, Genetically Modified Trees Have Been Planted in a U.S. Forest

Reporting on the field-planting milestone.

Read The New York Times report

Earlier writing

Responsibility at planetary scale.

“An Edenic interpretation of the preindustrial climate, coupled with a lack of understanding of what humans are actually doing, on an energetic level, with our recent rerouting of the carbon cycle, has led to the positioning of climate change among a general class of ‘environmental’ problems, and a lack of recognition of the epochal significance of a single species’ wholesale liberation of energy stored for a significant fraction of the history of the Earth in such a short time period as 200 years.

This act by our species also confers on us the responsibility to manage global carbon flux in general for the foreseeable future, and this represents a movement toward homeostatic metabolism for the biosphere as a whole.”

Patrick Mellor, “From Carboniferous to Carbocene,” The Ecology of Arcadia

Published foundations

The writing behind the institution.

These Palladium articles present the planetary and biotechnology arguments that inform Carbocene’s work. Their longer source essays are linked with each article.

Beyond Arcadian and imperial ecology

Human influence is already part of the Earth system.

Carbocene works toward living systems with greater functional connectivity, energy retention, resilience, and capacity for future development.

Living systems capture energy, retain it, recursively transform it, and use it to generate further organization. The ethical direction is systemic functional improvement: greater retention, communication, reciprocal organization, and room for living systems to adapt.

Interventions are judged through productivity, ecological relationships, resilience, material persistence, and future biological possibility alongside yield and carbon accounting.

We work toward ecologies in which human knowledge becomes a responsible participant.

The long horizon

The living world and human possibility are one project.

The sunflower forest and the road across the star fields depend on one another. A civilization that destroys its living foundation cannot sustain a longer future. A civilization that abandons knowledge, ambition, and coordinated action cannot protect that foundation at the required scale.

“I know that we exist in the morning twilight of humanity and pray that we survive its noon....If we go down now I do not believe we will ever again have the resources or the strength to defend the sunflower forest and simultaneously to follow the beckoning road across the star fields. It is now or never for both, and the price is very high.”
— Loren Eiseley, The Invisible Pyramid, 1970

Why nonprofit?

Plant biotechnology often needs years between proof and use.

Field development can create substantial public, scientific, physical, and eventual commercial value before it produces a sufficiently immediate or concentrated private return.

Intermediate-scale development

Work between laboratory demonstration and large-scale use, where biological performance, ecological consequences, materials, and productive applications can be tested.

Multiple forms of value

Pursue public, scientific, physical, ecological, and eventual commercial value without forcing every stage into one return profile.

Patient evidence

Measure biological and material outcomes across the seasons, sites, and regulatory timelines the work actually requires.

Revenue and licensing

Use appropriate licensing, revenue, and industrial partnerships to support continued mission-driven development.

Program partnerships

Build the scientific, landholder, philanthropic, and industrial relationships required for larger deployment programs.

Long-horizon technical capacity

Maintain biological inventory, propagation systems, field practice, measurement, facilities, records, and practical knowledge across the timescales living systems require.

Carbocene Industries is an independent 501(c)(3) nonprofit organization. Carbocene Industries owns and operates carbocene.org. Its Charity ID / EIN is 33-1631522, and its physical address is 7046 Outlook Ave, Oakland, CA 94605.

See the work

Carbon drawdown, durable materials, and resilient ecosystems.

See how Carbocene turns these purposes into specific biological systems, research programs, and measurable physical questions.

Explore the Research